errr...it's just that time of the month for me, Mark.
Umm...to give you a serious answer:
1. The links pages could be the start of something great: an Apolyton "portal". So it makes me sad that they haven't quite worked.
2. They are kind of daunting. Perhaps if you didn't always have to go through a category to find stuff. (Like have the most popular links accessible through a side menu that doesn't make people go through the categories.
3. Also would be nice if there were a category called "products" with the stuff for sale, there. You coiuld still have seperate game sections but it would be nice to cross-refernce so that people can check out all the merchandise without having to always go to a game section first.
4. These are just general comments but others may have some good suggestions.