List of Presidents of Switzerland, 1939-1945
Source : Ben Cahoon, World Statesmen
1939 Philipp Etter
1940 Marcel Pilet-Golaz
1941 Ernst Wetter
1942 Philipp Etter
1943 Enrico Celio
1944 Werner Stampfli
1945 Eduard von Steiger
As for the alliance, I think Peter can answer that question better than I can, I'm not quite sure and would actually like to know that myself as well...