Tootool2, you have described the very first problem faced by any scenario builder. Using your cheat mode, go to 'Select Human Player', then pick the civ you want to start with. Using 'Create Unit', place a settler unit where you want your first city, then place one where you want your second city, and so on. When you've placed a settler on each place you want a city, click on one of them and, using the Orders menu, click 'build new city', then move to the next settler and so on. When they're all done, select another civ as human player and repeat the same thing again. And then the next and so on. Check out the tips section on Scenario League site for more information. Good luck!
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